Summary of Ensembl identifiers for RNA-seq matrices

PolyA RNA-seq

Annotation Table

Summary of biotypes that are dropped due to zero expression:

Summary of biotypes that are dropped due to merging multiple Ensembl identifiers:

Stranded RNA-seq

Annotation Table

Summary of biotypes that are dropped due to low expression:

Summary of biotypes that are dropped due to merging multiple Ensembl identifiers:

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